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In http://theory.cm.utexas.edu/henkelman/code/bader/
one can find a software that performs Bader's analysis starting
from charge on a regular grid. One should use PAW to compute the
charge density. The required "cube" format can be produced using
pp.x (info by G. Lapenna who has successfully used this
technique, but adds: ``Problems occur with polar X-H bonds or in
all cases where the zero-flux of density comes too close to atoms
described with pseudo-potentials"). This code should perform
decomposition into Voronoi polyhedra as well, in place of obsolete
code voronoy.x (removed from distribution since v.4.2).
Alternatively, you can use CRITIC2, available at
https://github.com/aoterodelaroza/critic2, which can
read directly pw.x output and ``XSF'' files. CRITIC2
functionaly include Bader's AIM, ELF, laplacian of density and
potentials, non-covalente interaction (NCI) plots and much more.